Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs945194 chr6:150386262 T/C 9.71E-7 171 1.83 24.53 25.97 KM Plot
PCPG rs9497698 chr6:147416176 A/T 0.000259 178 25.47 26.62 8.67 KM Plot
PCPG rs950318 chr3:80403186 C/G 4.66E-7 176 25.77 23.53 19.87 KM Plot
PCPG rs9507917 chr13:28238930 C/G 5.84E-6 177 25.28 26.57 11.78 KM Plot
PCPG rs9512781 chr13:28241123 C/T 5.38E-6 178 11.78 26.57 25.17 KM Plot
PCPG rs9513224 chr13:97935785 A/G 0.000322 178 20.13 26.27 25.4 KM Plot
PCPG rs951367 chr3:182474060 C/T 1.19E-5 174 13.27 25.85 25.53 KM Plot
PCPG rs951978 chr3:80578514 G/C 6.99E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs951979 chr3:80578398 G/C 6.99E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs9528656 chr13:64106538 T/C 2.74E-5 178 22.63 22.63 26.57 KM Plot
PCPG rs9528657 chr13:64107535 A/C 2.74E-5 178 22.63 22.63 26.57 KM Plot
PCPG rs9531998 chr13:37525567 T/C 0.000329 176 4.17 24.23 25.7 KM Plot
PCPG rs9532001 chr13:37535810 T/C 0.00031 177 4.17 24.23 25.87 KM Plot
PCPG rs9532002 chr13:37545515 A/G 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs9532005 chr13:37588854 G/A 0.000285 178 4.17 24.7 25.7 KM Plot